HuBMAP-wide data products contain consolidated data for all datasets of a particular assay type and tissue, across all datasets, assay variants, and data providers. RNA-seq data products are added as both raw and processed versions: 'raw' features gene expression count matrices from the HuBMAP RNA-seq pipeline, and 'processed' versions are the results of secondary analysis (normalization, filtering, dimensionality reduction, clustering) applied to the raw matrix.
| Tissue Type | Creation Time | Assay Type | Number of Datasets | Total Raw Cells | Number Raw Cell Types | Total Processed Cells | Number Processed Cell Types | Raw Data Product Download | Processed Data Product Download | Shiny App | (All Versions) |
|---|---|---|---|---|---|---|---|---|---|---|---|
Small Intestine |
Nov. 7, 2024, 3:06 p.m. | codex | 68 | 1331626 | NA | 0 | NA | Raw H5AD | NA | All versions of Small Intestine | |
|
Small Intestine |
Oct. 31, 2024, 5:32 p.m. | rna-seq | 43 | 146988 | NA | 105499 | NA | Raw H5AD | Processed H5AD | Shiny App | All versions of Small Intestine |
|
Small Intestine |
Oct. 7, 2024, 3:17 p.m. | atac | 41 | 450494 | NA | 0 | NA | Raw h5mu | NA | All versions of Small Intestine | |
|
Small Intestine |
July 22, 2024, 7:36 p.m. | rna-seq | 43 | 146988 | NA | 105499 | NA | Raw H5AD | Processed H5AD | Shiny App | All versions of Small Intestine |